Smo440203 (PACid_15403255)


Aliases : PACid_15403255

Description : 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. chromatin-remodeling protein 11 (CHR11) FUNCTIONS IN: in 7 functions INVOLVED IN: cell growth, embryo sac development LOCATED IN: nucleus, chromatin remodeling complex EXPRESSED IN: 24 plant structures EXPRESSED DURING: 15 growth stages CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021) BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). & (q7g8y3|isw2_orysa : 1408.0


Gene families : OG_01_0000140 (Gene family) Phylogenetic Tree(s): OG0000140_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo440203
Cluster HCCA cluster: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT2G13370 CHR5 chromatin remodeling 5 0.02 Gene family
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 Gene family
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 Gene family
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 Gene family
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.05 Gene family
Cpa|evm.model.tig00000983.26 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.02 Gene family
Cre03.g179300 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.01 Gene family
Cre08.g377200 No alias No description available 0.03 Gene family
GSVIVT01012117001 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
GSVIVT01017791001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
GSVIVT01035901001 No alias No description available 0.05 Gene family
GSVIVT01037235001 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
LOC_Os05g05230 Os05g0144300 27.3.44 RNA.regulation of transcription.Chromatin... 0.05 Gene family
LOC_Os06g01320 Os06g0102800,... 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family
LOC_Os07g31450 Os07g0497100 28.1 DNA.synthesis/chromatin structure chromatin... 0.05 Gene family
LOC_Os07g46590 Os07g0660200 28.1 DNA.synthesis/chromatin structure chromatin... 0.01 Gene family
MA_102992g0020 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
Solyc01g067390.3.1 Solyc01g067390.3 28.1 DNA.synthesis/chromatin structure chromatin... 0.07 Gene family
Solyc02g068560.3.1 Solyc02g068560.3 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
Solyc06g010200.3.1 Solyc06g010200.3 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
Solyc06g065730.3.1 Solyc06g065730.3 No description available 0.03 Gene family
Solyc08g029130.3.1 Solyc08g029130.3 No description available 0.03 Gene family
Solyc11g062010.2.1 Solyc11g062010.2 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
Solyc12g099910.2.1 Solyc12g099910.2 28.1 DNA.synthesis/chromatin structure chromatin... 0.02 Gene family
Zm00001d006428 GRMZM2G181158,... 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
Zm00001d006798 GRMZM2G102625 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
Zm00001d007089 GRMZM2G141258 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
Zm00001d021541 GRMZM2G316191 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
Zm00001d022405 GRMZM2G010342 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
Zm00001d024816 GRMZM2G097289,... 27.3.44 RNA.regulation of transcription.Chromatin... 0.06 Gene family
Zm00001d045109 GRMZM2G409865,... No description available 0.08 Gene family
Zm00001d045635 GRMZM2G472428 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0043044 ATP-dependent chromatin remodeling IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR015194 ISWI_HAND-dom 766 812
No external refs found!