Tin_g37393


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g37393
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.04 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
Adi_g004372 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g097074 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27794 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18706 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28002 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38666 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61086 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23407 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27898 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16003 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23672 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.03 OrthoFinder output from all 47 species
Cba_g03404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17193 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G000800.1 Ceric.27G000800 not classified & original description: pacid=50605275... 0.05 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Dac_g30267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45442 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22836 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010654001 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.03 OrthoFinder output from all 47 species
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Lfl_g06546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17305 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g28724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34247 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23882 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g25428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57968 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63288 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63824 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05183 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05273 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g06423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06693 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g06960 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g07486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10335 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g18893 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49216 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53964 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56263 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61518 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1579.g028098 No alias not classified & original description: CDS=1-249 0.04 OrthoFinder output from all 47 species
Sam_g08403 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo118230 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo126075 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.04 OrthoFinder output from all 47 species
Smo96927 EMB2758 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Solyc04g051480.1.1 OTP84, Solyc04g051480 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc10g005090.3.1 Solyc10g005090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33897 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g45256 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56367 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
Zm00001e036537_P001 Zm00001e036537 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 647 709
IPR002885 Pentatricopeptide_repeat 532 562
IPR002885 Pentatricopeptide_repeat 604 628
IPR002885 Pentatricopeptide_repeat 431 461
IPR002885 Pentatricopeptide_repeat 302 327
IPR002885 Pentatricopeptide_repeat 330 360
IPR002885 Pentatricopeptide_repeat 403 423
IPR002885 Pentatricopeptide_repeat 229 259
IPR002885 Pentatricopeptide_repeat 570 595
IPR002885 Pentatricopeptide_repeat 93 131
No external refs found!