Smo440021 (PACid_15401840)


Aliases : PACid_15401840

Description : 28.2 DNA.repair Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1. replicon protein A2 (RPA2) CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365) BEST Arabidopsis thaliana protein match is: Replication protein A, subunit RPA32 (TAIR:AT3G02920.1) Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12 Bacteria - 1396 Metazoa - 17338 Fungi - 3422 Plants - 5037 Viruses - 0 Other Eukaryotes - 2996 (source: NCBI BLink). & (chl4|518981 : 167.0


Gene families : OG_01_0002004 (Gene family) Phylogenetic Tree(s): OG0002004_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo440021
Cluster HCCA cluster: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020684.26 No alias 29.1 protein.aa activation RPA32B 0.01 Gene family
Cre02.g100000 No alias 29.1 protein.aa activation RPA32B 0.02 Gene family
GSVIVT01035537001 No alias 28.2 DNA.repair Encodes a component of Replication... 0.05 Gene family
Solyc07g018300.3.1 Solyc07g018300.3 28.2 DNA.repair Encodes a component of Replication... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR014892 RPA_C 165 271
No external refs found!