Smo438800 (PACid_15401761)


Aliases : PACid_15401761

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING RING/U-box superfamily protein FUNCTIONS IN: zinc ion binding CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957) BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G10150.1) Has 8909 Blast hits to 8880 proteins in 293 species: Archae - 0 Bacteria - 9 Metazoa - 2258 Fungi - 649 Plants - 4733 Viruses - 65 Other Eukaryotes - 1195 (source: NCBI BLink). & (loc_os02g35144.1 : 113.0


Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo438800
Cluster HCCA cluster: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT2G37580 No alias RING/U-box superfamily protein 0.02 Gene family
AT5G42200 No alias RING/U-box superfamily protein 0.01 Gene family
LOC_Os04g49550 Os04g0585000 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.01 Gene family
LOC_Os06g34620 Os06g0537300 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
MA_10072804g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.17 Gene family
Solyc07g053420.3.1 Solyc07g053420.3 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.01 Gene family
Zm00001d016140 GRMZM2G358711 No description available 0.01 Gene family
Zm00001d016142 GRMZM2G324111 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d027685 GRMZM2G056804 No description available 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 98 142
No external refs found!