Smo438472 (PACid_15421135)


Aliases : PACid_15421135

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING RING/U-box superfamily protein FUNCTIONS IN: zinc ion binding INVOLVED IN: biological_process unknown LOCATED IN: cellular_component unknown CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016) BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1) Has 1580 Blast hits to 1234 proteins in 158 species: Archae - 0 Bacteria - 10 Metazoa - 420 Fungi - 112 Plants - 626 Viruses - 18 Other Eukaryotes - 394 (source: NCBI BLink). & (chl4|521188 : 88.6


Gene families : OG_01_0001042 (Gene family) Phylogenetic Tree(s): OG0001042_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo438472
Cluster HCCA cluster: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT3G06330 No alias RING/U-box superfamily protein 0.02 Gene family
LOC_Os04g01490 Os04g0105100 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.01 Gene family
Solyc01g067800.3.1 Solyc01g067800.3 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 411 453
No external refs found!