Tin_g34122


Description : component *(uL13) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g34122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00040540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT5G48760 No alias Ribosomal protein L13 family protein 0.03 OrthoFinder output from all 47 species
Adi_g124594 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01021080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
MA_186340g0010 No alias component RPL13a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Pp3c11_17280V3.1 Pp3c11_17280 Ribosomal protein L13 family protein 0.02 OrthoFinder output from all 47 species
Pp3c1_15830V3.1 Pp3c1_15830 Ribosomal protein L13 family protein 0.03 OrthoFinder output from all 47 species
Pp3c2_20550V3.1 Pp3c2_20550 Ribosomal protein L13 family protein 0.01 OrthoFinder output from all 47 species
Ppi_g35213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo166650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Spa_g10532 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g15627 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g44762 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e005719_P002 Zm00001e005719 component RPL13a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e012017_P002 Zm00001e012017 component RPL13a of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 1 74
No external refs found!