Smo437944 (PACid_15421958)


Aliases : PACid_15421958

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. auxin response factor 2 (ARF2) FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity INVOLVED IN: in 7 processes LOCATED IN: nucleus, chloroplast EXPRESSED IN: 23 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525) BEST Arabidopsis thaliana protein match is: auxin response factor 1 (TAIR:AT1G59750.2). & (loc_os12g29520.3 : 523.0


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo437944
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01015035001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family
LOC_Os04g56850 Os04g0664400 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc11g013480.2.1 Solyc11g013480.2 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 266 348
No external refs found!