Cre03.g158550


Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g158550
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.02 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.01 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.01 Archaeplastida
AT4G31900 PKR2 chromatin remodeling factor, putative 0.01 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.01 Archaeplastida
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.03 Archaeplastida
Cpa|evm.model.tig00000144.188 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cpa|evm.model.tig00000691.35 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.01 Archaeplastida
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
LOC_Os05g05780.1 No alias chromatin remodeling factor (Iswi) 0.01 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.08 Archaeplastida
MA_10437250g0010 No alias Probable helicase CHR10 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_23378g0020 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.01 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Mp1g07380.1 No alias CHD3-type chromatin-remodeling factor CHR7... 0.01 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.01 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.01 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.01 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.01 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.01 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.01 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.02 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.01 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.01 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 970 1086
IPR000330 SNF2_dom 628 922
IPR023780 Chromo_domain 523 579
No external refs found!