1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g30531

Tin_g30531 (TEM1, EDF1)


Aliases : TEM1, EDF1

Description : AP2-RAV-type transcription factor *(EDF) & original description: none


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30531

Target Alias Description ECC score Gene Family Method Actions
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
Als_g17658 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.05 OrthoFinder output from all 47 species
Aop_g18897 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036380 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Cba_g71540 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G072500.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os05g47650.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os06g01860.1 LOC_Os06g01860 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
MA_246350g0010 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Pir_g49278 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Solyc04g007000.2.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Spa_g29371 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Tin_g38307 EDF3 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e002215_P001 NGA3, Zm00001e002215 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e020092_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Zm00001e026443_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e028111_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Zm00001e032325_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 80 128
IPR003340 B3_DNA-bd 251 340
No external refs found!