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  5. Tin_g30398

Tin_g30398


Description : R-loop reader protein *(ALBA1/2) & original description: none


Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30398

Target Alias Description ECC score Gene Family Method Actions
AT1G29250 No alias Alba DNA/RNA-binding protein 0.03 OrthoFinder output from all 47 species
AT2G34160 No alias Alba DNA/RNA-binding protein 0.03 OrthoFinder output from all 47 species
Adi_g026253 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080251 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g51475 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010006 No alias R-loop reader protein *(ALBA1/2) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0024.g020384 No alias R-loop reader protein *(ALBA1/2) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g05649 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.54 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre09.g401600 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01017289001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os02g10810.1 LOC_Os02g10810 R-loop reader protein (ALBA1/2) 0.03 OrthoFinder output from all 47 species
LOC_Os06g40040.1 LOC_Os06g40040 R-loop reader protein (ALBA1/2) 0.02 OrthoFinder output from all 47 species
Nbi_g14833 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_20750V3.1 Pp3c12_20750 Alba DNA/RNA-binding protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023254 No alias R-loop reader protein *(ALBA1/2) & original description:... 0.02 OrthoFinder output from all 47 species
Spa_g55877 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 46 107
No external refs found!