Tin_g29210


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g29210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00115350 RARE1,... Pentatricopeptide repeat-containing protein At5g13270,... 0.05 OrthoFinder output from all 47 species
AMTR_s00083p00015670 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT2G21090 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G35030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G36980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g18046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32785 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37659 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g42493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12484 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g37336 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0002.g001624 No alias not classified & original description: CDS=110-1882 0.09 OrthoFinder output from all 47 species
Cba_g04734 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g31382 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G058800.1 Ceric.01G058800 not classified & original description: pacid=50591781... 0.03 OrthoFinder output from all 47 species
Ceric.06G033000.1 Ceric.06G033000 not classified & original description: pacid=50620249... 0.05 OrthoFinder output from all 47 species
Ceric.09G092300.1 Ceric.09G092300 not classified & original description: pacid=50588334... 0.05 OrthoFinder output from all 47 species
Ceric.15G066400.1 Ceric.15G066400 not classified & original description: pacid=50640755... 0.07 OrthoFinder output from all 47 species
Ceric.35G034300.1 Ceric.35G034300 not classified & original description: pacid=50581547... 0.04 OrthoFinder output from all 47 species
Ceric.37G044800.1 Ceric.37G044800 not classified & original description: pacid=50617007... 0.03 OrthoFinder output from all 47 species
Dac_g43238 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07698 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g08493 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08636 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08846 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16806 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g28005 CRR2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g37178 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g41011 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g43173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45923 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47937 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g47945 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g50102 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g12683 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g02726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 OrthoFinder output from all 47 species
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01031733001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g39090.1 LOC_Os07g39090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g39910.1 LOC_Os07g39910 Pentatricopeptide repeat-containing protein At1g25360... 0.05 OrthoFinder output from all 47 species
LOC_Os08g33700.1 LOC_Os08g33700 Pentatricopeptide repeat-containing protein At3g47530... 0.02 OrthoFinder output from all 47 species
LOC_Os11g01836.1 LOC_Os11g01836 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Len_g26584 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.09 OrthoFinder output from all 47 species
MA_953793g0020 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_95507g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Nbi_g09695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15427 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g17268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19558 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16492 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61853 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27190 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.05 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Solyc01g098150.3.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.06 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc07g065730.1.1 Solyc07g065730 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Solyc09g082170.4.1 Solyc09g082170 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.02 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Solyc11g040060.3.1 EMB2758, Solyc11g040060 Pentatricopeptide repeat-containing protein At4g33990... 0.05 OrthoFinder output from all 47 species
Solyc11g066920.1.1 CRR28, Solyc11g066920 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Solyc12g099850.1.1 Solyc12g099850 Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
Spa_g45656 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.07 OrthoFinder output from all 47 species
Zm00001e023800_P003 PDE247, CLB19,... RNA editing factor (CLB19) 0.04 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.01 OrthoFinder output from all 47 species
Zm00001e034445_P001 LPA66, Zm00001e034445 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR046848 E_motif 139 178
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 97 120
No external refs found!