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  5. Tin_g28322

Tin_g28322


Description : component *(TFB2) of TFIIh basal transcription factor complex & original description: none


Gene families : OG0006103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g28322

Target Alias Description ECC score Gene Family Method Actions
AT4G17020 No alias transcription factor-related 0.02 OrthoFinder output from all 47 species
Als_g04987 No alias component *(TFB2) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Ceric.1Z002000.1 Ceric.1Z002000 component *(TFB2) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
Sam_g10341 No alias component *(TFB2) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Solyc02g078440.3.1 Solyc02g078440 subunit TFB2 of core module. component TFB2 of TFIIh... 0.03 OrthoFinder output from all 47 species
Zm00001e006515_P002 Zm00001e006515 subunit TFB2 of core module. component TFB2 of TFIIh... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEA Interproscan
MF GO:0001671 ATPase activator activity IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0017121 plasma membrane phospholipid scrambling IEP HCCA
MF GO:0017128 phospholipid scramblase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034204 lipid translocation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045332 phospholipid translocation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0097035 regulation of membrane lipid distribution IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140303 intramembrane lipid transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR040662 Tfb2_C 475 542
IPR004598 TFIIH_p52/Tfb2 106 460
No external refs found!