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  5. Tin_g27969

Tin_g27969


Description : not classified & original description: none


Gene families : OG0016926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016926_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g27969
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Aop_g15697 VAC1, ECB2, ATECB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.24G025900.1 Ceric.24G025900 not classified & original description: pacid=50629515... 0.05 OrthoFinder output from all 47 species
Len_g18063 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g08053 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38343 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14893 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 754 776
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 551 573
IPR002885 Pentatricopeptide_repeat 855 878
IPR002885 Pentatricopeptide_repeat 75 101
IPR002885 Pentatricopeptide_repeat 678 725
IPR002885 Pentatricopeptide_repeat 476 522
IPR002885 Pentatricopeptide_repeat 173 219
IPR002885 Pentatricopeptide_repeat 577 623
IPR002885 Pentatricopeptide_repeat 274 319
IPR002885 Pentatricopeptide_repeat 374 421
No external refs found!