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  5. Tin_g23873

Tin_g23873


Description : RING-H2-class BTL-subclass E3 ubiquiTin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g23873

Target Alias Description ECC score Gene Family Method Actions
AT1G26800 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G60080 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g06321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27273 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0230.g059174 No alias not classified & original description: CDS=1-867 0.04 OrthoFinder output from all 47 species
Ceric.01G021600.1 Ceric.01G021600 not classified & original description: pacid=50590743... 0.03 OrthoFinder output from all 47 species
Ceric.14G002100.1 Ceric.14G002100 not classified & original description: pacid=50633322... 0.03 OrthoFinder output from all 47 species
Ehy_g13089 RHC1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19575 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os12g02620.1 LOC_Os12g02620 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
MA_10428335g0020 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
Msp_g10979 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g02310 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ore_g10219 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g37435 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g11589 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g14669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g065650.1.1 Solyc02g065650 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.05 OrthoFinder output from all 47 species
Solyc08g075910.1.1 RHC1A, Solyc08g075910 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 281 323
No external refs found!