1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g22027

Tin_g22027


Description : tRNA 4-demethylwyosine synthase *(TYW1) & original description: none


Gene families : OG0006618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006618_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g22027
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT1G75200 No alias flavodoxin family protein / radical SAM domain-containing protein 0.03 OrthoFinder output from all 47 species
Ala_g35438 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.05 OrthoFinder output from all 47 species
Cba_g01245 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G054200.1 Ceric.05G054200 tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g14137 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01009707001 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.02 OrthoFinder output from all 47 species
LOC_Os03g56390.1 LOC_Os03g56390 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 OrthoFinder output from all 47 species
Lfl_g35032 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g07642 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g11829 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012245 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e005848_P001 Zm00001e005848 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0010181 FMN binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007197 rSAM 461 642
IPR013917 tRNA_wybutosine-synth 645 708
IPR008254 Flavodoxin/NO_synth 159 300
No external refs found!