Tin_g21591 (FIB1, ATFIB1, ATFBR1,...)

Aliases : FIB1, ATFIB1, ATFBR1, FBR1, SKIP7

Description : methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex & original description: none

Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g21591
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00218020	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.02	OrthoFinder output from all 47 species
AMTR_s00099p00093470	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.02	OrthoFinder output from all 47 species
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.05	OrthoFinder output from all 47 species
Adi_g076310	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Als_g51914	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Azfi_s0093.g043290	FIB2, ATFIB2	not classified & original description: CDS=212-970	0.04	OrthoFinder output from all 47 species
Cba_g27536	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.02	OrthoFinder output from all 47 species
Ceric.02G070500.1	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001049.16	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.04	OrthoFinder output from all 47 species
Gb_33899	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
MA_124463g0010	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.02	OrthoFinder output from all 47 species
Mp2g12880.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species
Nbi_g41181	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Pir_g60296	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Spa_g31178	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	9	236

External Links

No external refs found!

Tin_g21591 (FIB1, ATFIB1, ATFBR1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation