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  5. Tin_g21306

Tin_g21306 (EMB3012)


Aliases : EMB3012

Description : nucleoporin of nuclear pore complex *(GP210) & original description: none


Gene families : OG0005031 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g21306

Target Alias Description ECC score Gene Family Method Actions
Aev_g04896 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.04 OrthoFinder output from all 47 species
Ala_g04222 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene39335.t1 EMB3012, Aspi01Gene39335 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene39337.t1 EMB3012, Aspi01Gene39337 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01032403001 EMB3012 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019101 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009488_P002 EMB3012, Zm00001e009488 GP210 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!