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  5. Tin_g21099

Tin_g21099 (DRB1, HYL1)


Aliases : DRB1, HYL1

Description : not classified & original description: none


Gene families : OG0000404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g21099

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00199170 DRB3,... Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Adi_g056885 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Als_g06091 DRB1, HYL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05097 DRB1, HYL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015360 DRB2 not classified & original description: CDS=1-594 0.03 OrthoFinder output from all 47 species
Dac_g09247 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
LOC_Os08g29530.2 LOC_Os08g29530 Double-stranded RNA-binding protein 4 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33970.1 DRB2, LOC_Os10g33970 Double-stranded RNA-binding protein 6 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os12g01916.1 DRB1, HYL1,... component HYL1 of DCL1-HYL1 miRNA biogenesis complex 0.05 OrthoFinder output from all 47 species
Len_g12623 DRB1, HYL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23544 DRB1, HYL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01223 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g65907 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Smo441949 DRB2 Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Smo71410 DRB2 Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc02g091460.3.1 Solyc02g091460 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 83 145
IPR014720 dsRBD_dom 2 66
No external refs found!