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  5. Tin_g20974

Tin_g20974


Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g20974

Target Alias Description ECC score Gene Family Method Actions
Ala_g07254 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14161 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene04292.t1 Aspi01Gene04292 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene10562.t1 Aspi01Gene10562 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02589 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cba_g31905 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G094900.1 Ceric.05G094900 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dde_g26421 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g16320 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g20806 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g27060.1 LOC_Os02g27060 High mobility group B protein 15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g01912 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Len_g57342 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp1g07350.1 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g05459 No alias DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g40091 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g59649 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g52651 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Tin_g02883 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 446 510
IPR001606 ARID_dom 214 297
No external refs found!