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  5. Tin_g20770

Tin_g20770


Description : EC_2.7 transferase transferring phosphorus-containing group & original description: none


Gene families : OG0002534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002534_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g20770

Target Alias Description ECC score Gene Family Method Actions
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.04 OrthoFinder output from all 47 species
Adi_g021889 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Ala_g11004 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Als_g03851 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Cba_g17083 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Ceric.25G023900.1 Ceric.25G023900 EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021073.40 No alias RNA processing.organelle machineries.ribonuclease... 0.01 OrthoFinder output from all 47 species
Dac_g14765 No alias EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Ehy_g04014 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
LOC_Os07g07310.1 RIF10, PNP,... polynucleotide phosphorylase (PNP) 0.01 OrthoFinder output from all 47 species
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.04 OrthoFinder output from all 47 species
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.04 OrthoFinder output from all 47 species
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.03 OrthoFinder output from all 47 species
Msp_g14489 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016674 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sam_g09102 No alias EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Sam_g15795 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Solyc02g086600.3.1 Solyc02g086600 polynucleotide phosphorylase (PNP) 0.03 OrthoFinder output from all 47 species
Zm00001e015113_P001 Zm00001e015113 polynucleotide phosphorylase (PNP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 195 257
IPR001247 ExoRNase_PH_dom1 373 506
IPR001247 ExoRNase_PH_dom1 64 192
IPR015848 PNPase_PH_RNA-bd_bac/org-type 290 370
IPR003029 S1_domain 678 747
IPR004088 KH_dom_type_1 615 670
No external refs found!