Tin_g20582 (CHR01, CHR1, CHA1,...)

Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : DNA helicase *(MOM1) & original description: none

Gene families : OG0004810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004810_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g20582

Target	Alias	Description	ECC score	Gene Family Method
Adi_g086251	PKL, GYM, CHR6,...	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g25806	PKR1, CHR4	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02731	CHR5	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g15932	PKR1, CHR4	DNA helicase *(MOM1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g23969	PKL, GYM, CHR6,...	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g25172	PKL, GYM, CHR6,...	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_01673	PKR1, CHR4	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Len_g57128	MOM1, MOM	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10244	CHR5	DNA helicase *(MOM1) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g58376	MOM1, MOM	DNA helicase *(MOM1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g07008	PKR1, CHR4	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e036737_P001	MOM1, MOM, Zm00001e036737	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	1298	1410
IPR000330	SNF2_N	1037	1266
IPR019787	Znf_PHD-finger	680	725

External Links

No external refs found!