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Tin_g20156 (PVA12)


Aliases : PVA12

Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface & original description: none


Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g20156

Target Alias Description ECC score Gene Family Method Actions
Cre03.g196900 VAP27, VAP27-1,... Vesicle-associated protein 1-1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os10g40140.1 LOC_Os10g40140 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Lfl_g00566 No alias contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Msp_g12102 No alias contact site protein (VAP27) of... 0.04 OrthoFinder output from all 47 species
Ppi_g16185 PVA12 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Solyc08g007200.4.1 Solyc08g007200 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Solyc08g007390.2.1 PVA12, Solyc08g007390 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Zm00001e018705_P003 VAP27-2, Zm00001e018705 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Zm00001e023106_P001 PVA12, Zm00001e023106 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 6 96
No external refs found!