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  5. Tin_g19921

Tin_g19921 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g19921

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00104970 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT1G06670 NIH nuclear DEIH-boxhelicase 0.04 OrthoFinder output from all 47 species
Ala_g10871 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16503 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06805 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g56190.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Pir_g44296 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo50132 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc07g044930.3.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 841 925
IPR011545 DEAD/DEAH_box_helicase_dom 291 446
IPR001650 Helicase_C 658 776
IPR011709 DEAD-box_helicase_OB_fold 1001 1088
IPR001374 R3H_dom 125 181
No external refs found!