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  5. Tin_g19131

Tin_g19131


Description : component *(Pcf11) of Cleavage Factor II (CF-IIm) complex & original description: none


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g19131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Als_g34081 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02188 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48921.t1 AT-GTL1, GTL1,... Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene71848.t1 Aspi01Gene71848 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2854.g113412 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.35G006300.1 Ceric.35G006300 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g37295 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22999 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026588001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.04 OrthoFinder output from all 47 species
LOC_Os03g02240.1 AT-GT2, GT2,... transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
MA_331768g0020 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Msp_g06995 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g27535 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16876 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34685 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc11g005380.2.1 Solyc11g005380 transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
Spa_g40341 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51431 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 968 1054
IPR044822 Myb_DNA-bind_4 1338 1425
IPR006569 CID_dom 205 305
No external refs found!