Tin_g18878

Description : not classified & original description: none

Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g18878

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00107p00082420	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT5G08610	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from all 47 species
AT5G63630	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	OrthoFinder output from all 47 species
Adi_g059684	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g06438	No alias	mRNA helicase *(RH31) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10300	No alias	mRNA helicase *(RH31) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g45472	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13628	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e020452_P002	Zm00001e020452	DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	123	296
IPR001650	Helicase_C	346	449

External Links

No external refs found!