- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G31070 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g003333 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g004975 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g005693 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g033835 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g041090 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g058169 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g080261 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g113395 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g16631 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g16997 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17658 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g24222 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g24393 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g24714 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g31201 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g36029 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g03728 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g04930 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05916 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07213 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19114 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19283 | CRR2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19949 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g23735 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30853 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30874 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05221 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07402 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g19301 | OTP84 | ssDNA-binding protein *(OSB) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aob_g23626 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27890 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g36879 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g42153 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g02614 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g02928 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g03230 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g03401 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g06659 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g08782 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09162 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g16819 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g19882 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g20139 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g20195 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g23786 | MEF19 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g23988 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g26042 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g28323 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g68097 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g69963 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0002.g001369 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: CDS=172-2610 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0013.g013171 | SLO1 | not classified & original description: CDS=1-1446 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0035.g025565 | No alias | not classified & original description: CDS=1-3945 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0035.g025724 | No alias | not classified & original description: CDS=1-3840 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0049.g030899 | No alias | not classified & original description: CDS=1-2946 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g02644 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g21995 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29504 | REME1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29871 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29979 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g34643 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G059000.1 | Ceric.04G059000 | not classified & original description: pacid=50632212... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G026400.1 | Ceric.07G026400 | not classified & original description: pacid=50626353... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.23G020600.1 | Ceric.23G020600 | not classified & original description: pacid=50609730... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.29G024800.1 | Ceric.29G024800 | not classified & original description: pacid=50625545... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.32G057100.1 | Ceric.32G057100 | not classified & original description: pacid=50598475... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000851.30 | No alias | Pentatricopeptide repeat-containing protein At5g61990,... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g03810 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07560 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g18582 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g27114 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g31659 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05761 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06366 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08263 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g11455 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g22538 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g31630 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g42645 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g49227 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g50137 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g24377 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g00984 | OSB3 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g04950 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01030443001 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_18263 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.01 | OrthoFinder output from all 47 species | |
| Gb_19693 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.01 | OrthoFinder output from all 47 species | |
| Gb_20571 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.01 | OrthoFinder output from all 47 species | |
| Gb_33411 | EMB2261 | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_40766 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os05g50950.1 | LOC_Os05g50950 | Pentatricopeptide repeat-containing protein At4g01030,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g02280.1 | LOC_Os07g02280 | RNA editing factor (OTP80) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g04832 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g25975 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g54327 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g13055 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g19879 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g24382 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g33055 | DOT4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g33318 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g22760 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g24627 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31269 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g39221 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g15801 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g24067 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25474 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g30055 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g40748 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g32582 | EMB2261 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g34904 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g01677 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g03074 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g07049 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12623 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12994 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g16422 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g19423 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g47021 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g03893 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g15731 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g23094 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g23106 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g07542 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g13232 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29087 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g48074 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g53371 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53384 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g55046 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g56081 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g56908 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g59302 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59303 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0009.g004386 | No alias | not classified & original description: CDS=1-2367 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0036.g011528 | EMB2758 | non-specific cation channel *(PQL1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0057.g014790 | No alias | not classified & original description: CDS=1-2049 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0225.g026308 | CRR22 | ssDNA-binding protein *(OSB) & original description: CDS=95-2287 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13514 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g26571 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29135 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g39629 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo81625 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g099850.1.1 | Solyc12g099850 | Pentatricopeptide repeat-containing protein At1g18485... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g09360 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g18079 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g23704 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g28935 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g30407 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0007034 | vacuolar transport | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| BP | GO:0031167 | rRNA methylation | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0070037 | rRNA (pseudouridine) methyltransferase activity | IEP | HCCA |
| BP | GO:0070475 | rRNA base methylation | IEP | HCCA |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 373 | 420 |
| IPR002885 | Pentatricopeptide_repeat | 171 | 218 |
| IPR002885 | Pentatricopeptide_repeat | 273 | 319 |
| IPR002885 | Pentatricopeptide_repeat | 68 | 119 |
| IPR002885 | Pentatricopeptide_repeat | 146 | 170 |
| IPR002885 | Pentatricopeptide_repeat | 450 | 472 |
| IPR002885 | Pentatricopeptide_repeat | 248 | 269 |
| IPR002885 | Pentatricopeptide_repeat | 348 | 371 |
| No external refs found! |