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  5. Tin_g15337

Tin_g15337


Description : not classified & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g15337

Target Alias Description ECC score Gene Family Method Actions
AT1G32360 No alias Zinc finger (CCCH-type) family protein 0.02 OrthoFinder output from all 47 species
Adi_g101999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Aob_g04427 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aop_g10028 No alias A1-class (Pepsin) protease & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14447 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Ceric.10G007100.1 Ceric.10G007100 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G012100.1 Ceric.31G012100 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Cre11.g476200 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g16771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16999 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Lfl_g22114 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Mp3g23720.1 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17330 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sam_g14380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g072720.3.1 Solyc06g072720 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g28121 No alias A1-class (Pepsin) protease & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 184 205
IPR000571 Znf_CCCH 233 257
IPR000571 Znf_CCCH 121 145
No external refs found!