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  5. Tin_g14974

Tin_g14974 (PAB2, PABP2, ATPAB2)


Aliases : PAB2, PABP2, ATPAB2

Description : mRNA poly-A-tail binding factor *(PABP) & original description: none


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Tin_g14974

Target Alias Description ECC score Gene Family Method Actions
AT1G49760 PAB8, PABP8 poly(A) binding protein 8 0.03 OrthoFinder output from all 47 species
AT2G23350 PABP4, PAB4 poly(A) binding protein 4 0.03 OrthoFinder output from all 47 species
Adi_g023675 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Adi_g075125 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ala_g15142 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Als_g13165 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Aop_g05955 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Cba_g10012 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.05 OrthoFinder output from all 47 species
Ceric.08G024400.1 PABP4, PAB4,... not classified & original description: pacid=50638155... 0.01 OrthoFinder output from all 47 species
Dde_g24340 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Dde_g51529 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07029 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os09g02700.1 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Len_g15984 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
MA_111003g0010 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.02 OrthoFinder output from all 47 species
Mp7g18970.1 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Ore_g17615 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.05 OrthoFinder output from all 47 species
Pir_g04520 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Pir_g19027 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Sam_g14825 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Smo101161 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.02 OrthoFinder output from all 47 species
Spa_g26485 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Spa_g56813 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e009430_P002 PAB2, PABP2,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Zm00001e033592_P004 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species
Zm00001e041182_P002 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 569 633
IPR000504 RRM_dom 217 285
IPR000504 RRM_dom 320 388
IPR000504 RRM_dom 126 193
IPR000504 RRM_dom 38 108
No external refs found!