Smo426107 (PACid_15405656)

Aliases : PACid_15405656

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR. SU(VAR)3-9 homolog 2 (SUVH2) CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728) BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 9 (TAIR:AT4G13460.2) Has 2532 Blast hits to 2457 proteins in 202 species: Archae - 0 Bacteria - 14 Metazoa - 1497 Fungi - 199 Plants - 683 Viruses - 0 Other Eukaryotes - 139 (source: NCBI BLink). & (loc_os07g25450.1 : 103.0

Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Smo426107
Cluster HCCA cluster: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G17770 SDG17, SUVH7 SU(VAR)3-9 homolog 7 0.02 Gene family
Cre02.g089200 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003105 SRA_YDG 144 295
No external refs found!