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  5. Tin_g14511

Tin_g14511


Description : RNA ediTing factor *(POCO) & original description: none


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g14511

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.04 OrthoFinder output from all 47 species
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g016255 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07750 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33654 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0492.g073535 No alias not classified & original description: CDS=381-2006 0.05 OrthoFinder output from all 47 species
Ceric.31G052700.1 Ceric.31G052700 RNA editing factor *(POCO) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g10643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24432 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03895 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.04 OrthoFinder output from all 47 species
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.06 OrthoFinder output from all 47 species
Gb_20238 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os01g19490.1 LOC_Os01g19490 Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.03 OrthoFinder output from all 47 species
LOC_Os04g25410.1 LOC_Os04g25410 Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35760.2 LOC_Os10g35760 Pentatricopeptide repeat-containing protein At2g20710,... 0.05 OrthoFinder output from all 47 species
LOC_Os12g34340.1 LOC_Os12g34340 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_10431989g0010 No alias RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.03 OrthoFinder output from all 47 species
Solyc01g081320.4.1 Solyc01g081320 Pentatricopeptide repeat-containing protein At5g27460... 0.03 OrthoFinder output from all 47 species
Solyc01g089870.3.1 Solyc01g089870 Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
Solyc02g078330.3.1 Solyc02g078330 Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
Solyc06g071900.3.1 Solyc06g071900 Pentatricopeptide repeat-containing protein At1g07590,... 0.03 OrthoFinder output from all 47 species
Solyc07g054090.3.1 Solyc07g054090 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007372_P001 Zm00001e007372 Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.05 OrthoFinder output from all 47 species
Zm00001e039746_P002 Zm00001e039746 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 515 568
IPR002885 Pentatricopeptide_repeat 369 427
IPR002885 Pentatricopeptide_repeat 456 483
No external refs found!