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  5. Tin_g14232

Tin_g14232 (ATRAD21.3, SYN4)


Aliases : ATRAD21.3, SYN4

Description : mitotic-specific Kleisin-type component *(SCC1) of cohesin regulator complex & original description: none


Gene families : OG0001004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g14232
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00010710 SYN3, ATRAD21.2,... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
AT3G59550 SYN3, ATRAD21.2, ATSYN3 Rad21/Rec8-like family protein 0.04 OrthoFinder output from all 47 species
Ceric.35G066500.1 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component *(SCC1) of... 0.05 OrthoFinder output from all 47 species
Cre09.g412450 ATRAD21.3, SYN4 Cell cycle.mitosis and meiosis.sister chromatid... 0.01 OrthoFinder output from all 47 species
Dac_g37942 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.04 OrthoFinder output from all 47 species
Solyc01g086690.2.1 SYN3, ATRAD21.2,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.03 OrthoFinder output from all 47 species
Spa_g54484 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR006910 Rad21_Rec8_N 1 100
IPR006909 Rad21/Rec8_C_eu 698 746
No external refs found!