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  5. Tin_g12179

Tin_g12179


Description : mRNA helicase *(RH31) & original description: none


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12179

Target Alias Description ECC score Gene Family Method Actions
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
AT5G08620 ATRH25, STRS2 DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Adi_g059684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06941 No alias mRNA helicase *(RH31) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g13231 No alias mRNA helicase *(RH31) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0009.g011827 No alias mRNA helicase *(RH31) & original description: CDS=535-2991 0.04 OrthoFinder output from all 47 species
Ceric.27G031600.1 Ceric.27G031600 mRNA helicase *(RH31) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g12157 No alias mRNA helicase *(RH31) & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g19403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Gb_09254 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g57980.1 LOC_Os02g57980 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os06g33520.1 LOC_Os06g33520 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Lfl_g39024 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432294g0010 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g10300 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01045 No alias mRNA helicase *(RH31) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g12386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13628 No alias mRNA helicase *(RH31) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g34517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g095740.4.1 Solyc01g095740 DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc12g056340.2.1 Solyc12g056340 Probable DEAD-box ATP-dependent RNA helicase 48... 0.03 OrthoFinder output from all 47 species
Spa_g11220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12217 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016261_P001 Zm00001e016261 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 336 511
IPR001650 Helicase_C 554 663
No external refs found!