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  5. Tin_g11965

Tin_g11965 (DegP9)


Aliases : DegP9

Description : protease *(Deg) & original description: none


Gene families : OG0000580 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000580_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11965

Target Alias Description ECC score Gene Family Method Actions
AT5G40200 DegP9 DegP protease 9 0.03 OrthoFinder output from all 47 species
Adi_g025739 DegP10 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g037782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13624 DegP10 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17032 DegP9 protease *(Deg) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10404 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22832.t1 DegP10, Aspi01Gene22832 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21854 DegP9 protease *(Deg) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58687 DegP9 protease *(Deg) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11213 DegP10 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032512001 DegP9 Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
LOC_Os02g50880.1 DegP9, LOC_Os02g50880 protease (Deg) 0.03 OrthoFinder output from all 47 species
LOC_Os05g34460.1 DegP10, LOC_Os05g34460 protease (Deg) 0.02 OrthoFinder output from all 47 species
Len_g08467 DegP9 protease *(Deg) & original description: none 0.05 OrthoFinder output from all 47 species
MA_17181g0010 DegP9 protease (Deg) 0.04 OrthoFinder output from all 47 species
MA_176437g0010 DegP10 protease (Deg) 0.04 OrthoFinder output from all 47 species
MA_7242206g0010 DegP10 protease (Deg) 0.04 OrthoFinder output from all 47 species
Mp1g05470.1 DegP9 protease (Deg) 0.03 OrthoFinder output from all 47 species
Pir_g13579 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019296 DegP9 protease *(Deg) & original description: CDS=177-2603 0.04 OrthoFinder output from all 47 species
Spa_g10123 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030879_P001 DegP9, Zm00001e030879 protease (Deg) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001478 PDZ 460 561
IPR041517 DEGP_PDZ 568 713
IPR017956 AT_hook_DNA-bd_motif 116 127
IPR017956 AT_hook_DNA-bd_motif 65 75
IPR017956 AT_hook_DNA-bd_motif 92 101
IPR017956 AT_hook_DNA-bd_motif 13 24
IPR017956 AT_hook_DNA-bd_motif 38 49
No external refs found!