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  5. Tin_g11820

Tin_g11820


Description : SSU processome assembly factor *(UTP21) & original description: none


Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11820

Target Alias Description ECC score Gene Family Method Actions
Adi_g103599 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene29262.t1 Aspi01Gene29262 SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0074.g037313 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Cre10.g466250 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g18111 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Gb_24979 No alias SSU processome assembly factor (UTP21) 0.03 OrthoFinder output from all 47 species
LOC_Os06g43690.1 LOC_Os06g43690 SSU processome assembly factor (UTP21) 0.03 OrthoFinder output from all 47 species
Len_g28360 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Mp3g13780.1 No alias SSU processome assembly factor (UTP21) 0.02 OrthoFinder output from all 47 species
Solyc01g087670.3.1 Solyc01g087670 SSU processome assembly factor (UTP21) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 194 280
IPR007319 SSU_processome_Utp21 697 916
IPR001680 WD40_repeat 471 506
IPR001680 WD40_repeat 552 589
No external refs found!