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  5. Tin_g11017

Tin_g11017


Description : REM-type transcription factor & original description: none


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11017
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00151100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT3G19184 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.07 OrthoFinder output from all 47 species
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.13 OrthoFinder output from all 47 species
Adi_g052583 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075571 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04057 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Als_g15351 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.15 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.2 OrthoFinder output from all 47 species
Aop_g22457 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene24779.t1 Aspi01Gene24779 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24780.t1 Aspi01Gene24780 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61918.t1 Aspi01Gene61918 REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0198.g057387 No alias REM-type transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.19 OrthoFinder output from all 47 species
Ceric.07G043800.1 Ceric.07G043800 REM-type transcription factor & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.12 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g18248 No alias REM-type transcription factor & original description: none 0.14 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.16 OrthoFinder output from all 47 species
Dcu_g43688 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01024536001 No alias RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.08 OrthoFinder output from all 47 species
Gb_07025 No alias transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.13 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.09 OrthoFinder output from all 47 species
Len_g01795 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.04 OrthoFinder output from all 47 species
MA_175090g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_20322g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_430451g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.14 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g36795 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g08674 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.18 OrthoFinder output from all 47 species
Nbi_g35599 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.19 OrthoFinder output from all 47 species
Ore_g28568 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c2_5990V3.1 Pp3c2_5990 AP2/B3-like transcriptional factor family protein 0.01 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018379 No alias REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.16 OrthoFinder output from all 47 species
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Solyc06g007530.2.1 Solyc06g007530 transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Solyc06g034140.3.1 Solyc06g034140 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.21 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 138 227
No external refs found!