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  5. Tin_g11001

Tin_g11001


Description : homologous recombination repair exonuclease *(EXO1) & original description: none


Gene families : OG0003251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11001
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00265020 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.11 OrthoFinder output from all 47 species
Azfi_s0009.g011947 No alias not classified & original description: CDS=18-1211 0.05 OrthoFinder output from all 47 species
Ceric.01G025500.1 Ceric.01G025500 homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000403.40 No alias DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Dac_g38690 No alias homologous recombination repair exonuclease *(EXO1) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01008397001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.12 OrthoFinder output from all 47 species
GSVIVT01021316001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.16 OrthoFinder output from all 47 species
Gb_08129 No alias homologous recombination repair exonuclease (EXO1) 0.04 OrthoFinder output from all 47 species
Gb_14686 No alias homologous recombination repair exonuclease (EXO1) 0.08 OrthoFinder output from all 47 species
MA_10431686g0010 No alias homologous recombination repair exonuclease (EXO1) 0.07 OrthoFinder output from all 47 species
Msp_g36441 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Nbi_g04891 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014655 No alias homologous recombination repair exonuclease *(EXO1) &... 0.06 OrthoFinder output from all 47 species
Sam_g35172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g071530.2.1 Solyc02g071530 homologous recombination repair exonuclease (EXO1) 0.07 OrthoFinder output from all 47 species
Solyc03g119070.2.1 Solyc03g119070 homologous recombination repair exonuclease (EXO1) 0.05 OrthoFinder output from all 47 species
Spa_g41224 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Spa_g51609 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Zm00001e019645_P001 Zm00001e019645 homologous recombination repair exonuclease (EXO1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 142 226
IPR006085 XPG_DNA_repair_N 1 97
No external refs found!