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  5. Tin_g10641

Tin_g10641


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g10641
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24733 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64236.t1 Aspi01Gene64236 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g24502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36532 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.04 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.03 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.05 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g27861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06272 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.03 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
GSVIVT01022794001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g55340.1 LOC_Os03g55340 Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11461 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.03 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species
Msp_g27283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Spa_g10895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 452 483
IPR002885 Pentatricopeptide_repeat 242 273
IPR002885 Pentatricopeptide_repeat 732 761
IPR002885 Pentatricopeptide_repeat 596 643
IPR002885 Pentatricopeptide_repeat 665 712
IPR002885 Pentatricopeptide_repeat 526 574
IPR002885 Pentatricopeptide_repeat 280 329
IPR002885 Pentatricopeptide_repeat 385 432
IPR002885 Pentatricopeptide_repeat 180 208
IPR002885 Pentatricopeptide_repeat 354 382
No external refs found!