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  5. Tin_g09998

Tin_g09998 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A

Description : component *(NRPE5) of RNA polymerase V complex & original description: none


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09998
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00034280 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Ala_g15567 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Aob_g06379 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31552.t1 NRPD5,... component *(NRPD5) of RNA polymerase IV complex &... 0.04 OrthoFinder output from all 47 species
Cba_g00422 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g15170 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Mp7g17520.1 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g00238 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005571 RNA_pol_Rpb5_N 9 93
IPR000783 RNA_pol_subH/Rpb5_C 136 208
No external refs found!