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  5. Tin_g09786

Tin_g09786


Description : not classified & original description: none


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09786
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g014933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.08 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g06710.1 LOC_Os03g06710 Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
LOC_Os07g28900.1 LOC_Os07g28900 Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
Len_g12772 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g15290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004055 No alias not classified & original description: CDS=1-1875 0.05 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 641 667
IPR002885 Pentatricopeptide_repeat 433 452
IPR002885 Pentatricopeptide_repeat 255 279
IPR002885 Pentatricopeptide_repeat 554 614
IPR002885 Pentatricopeptide_repeat 706 747
IPR002885 Pentatricopeptide_repeat 172 217
IPR002885 Pentatricopeptide_repeat 812 854
IPR002885 Pentatricopeptide_repeat 460 505
IPR002885 Pentatricopeptide_repeat 286 330
No external refs found!