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  5. Tin_g09516

Tin_g09516


Description : not classified & original description: none


Gene families : OG0006888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09516
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00245550 evm_27.TU.AmTr_v1... Regulator of nonsense transcripts 1 homolog... 0.06 OrthoFinder output from all 47 species
AT5G35970 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Aev_g05515 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g13293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09081 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g19085 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g06579 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.19G036700.1 Ceric.19G036700 not classified & original description: pacid=50576348... 0.05 OrthoFinder output from all 47 species
Dac_g15964 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g01970 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Dde_g37707 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ehy_g15105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07655 No alias Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
LOC_Os02g47560.1 LOC_Os02g47560 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Lfl_g36332 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10434072g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10435849g0020 No alias Regulator of nonsense transcripts 1 homolog... 0.05 OrthoFinder output from all 47 species
Mp3g22970.1 No alias Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
Msp_g02098 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08978 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g16466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09781 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g04666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36707 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo90782 No alias Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 753 956
IPR041677 DNA2/NAM7_AAA_11 527 743
No external refs found!