Tin_g09471 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : regulatory E3 ubiquiTin ligase (ORTH/VIM) of RNA-independent DNA methylation & original description: none


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09471
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Ceric.01G130300.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Ceric.02G085800.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.15 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g163850 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_19211 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g04780.1 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e029714_P002 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR003105 SRA_YDG 268 416
IPR027370 Znf-RING_euk 502 533
IPR019787 Znf_PHD-finger 12 58
No external refs found!