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  5. Tin_g09334

Tin_g09334


Description : component *(MPE1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09334

Target Alias Description ECC score Gene Family Method Actions
AT5G47430 No alias DWNN domain, a CCHC-type zinc finger 0.02 OrthoFinder output from all 47 species
Ala_g22380 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Als_g20650 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24993.t2 Aspi01Gene24993 component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene58252.t1 Aspi01Gene58252 component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g14090 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.39G057500.1 Ceric.39G057500 component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Mp2g17650.1 No alias component MPE1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Msp_g01132 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pir_g15664 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025829 Zn_knuckle_CX2CX3GHX4C 193 212
IPR001878 Znf_CCHC 438 453
IPR014891 DWNN_domain 3 76
No external refs found!