Smo423935 (PACid_15403043)


Aliases : PACid_15403043

Description : 27.3.20 RNA.regulation of transcription.G2-like transcription factor family, GARP Homeodomain-like superfamily protein CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287) BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G38300.1) Has 1902 Blast hits to 1885 proteins in 114 species: Archae - 0 Bacteria - 0 Metazoa - 125 Fungi - 17 Plants - 1623 Viruses - 0 Other Eukaryotes - 137 (source: NCBI BLink). & (chl4|512738 : 81.6


Gene families : OG_01_0000018 (Gene family) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo423935
Cluster HCCA cluster: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT5G45580 No alias Homeodomain-like superfamily protein 0.03 Gene family
GSVIVT01001374001 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
GSVIVT01020827001 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
GSVIVT01033381001 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
GSVIVT01036717001 No alias No description available 0.02 Gene family
LOC_Os02g14490 Os02g0241200 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
LOC_Os03g03760 Os03g0129800 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
LOC_Os04g56990 Os04g0665600 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
LOC_Os06g35140 Os06g0543200 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
LOC_Os06g45890 Os06g0670300 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
LOC_Os08g33050 Os08g0426866 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
LOC_Os11g01480 Os11g0106100 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
LOC_Os12g01490 Os12g0105600 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
MA_335624g0020 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
MA_52379g0010 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
MA_8183372g0010 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.04 Gene family
Solyc02g080710.2.1 Solyc02g080710.2 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
Solyc06g051060.3.1 Solyc06g051060.3 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family
Solyc07g045000.3.1 Solyc07g045000.3 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Solyc10g076460.2.1 Solyc10g076460.2 27.3.20 RNA.regulation of transcription.G2-like... 0.03 Gene family
Solyc10g078720.2.1 Solyc10g078720.2 27.3.20 RNA.regulation of transcription.G2-like... 0.03 Gene family
Solyc11g022470.2.1 Solyc11g022470.2 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
Solyc12g006280.2.1 Solyc12g006280.2 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
Zm00001d015407 GRMZM2G052544 No description available 0.02 Gene family
Zm00001d036638 GRMZM2G100709 27.3.20 RNA.regulation of transcription.G2-like... 0.05 Gene family
Zm00001d046981 GRMZM2G454449 27.3.25 RNA.regulation of transcription.MYB domain... 0.06 Gene family
Zm00001d051527 GRMZM2G070865 27.3.20 RNA.regulation of transcription.G2-like... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001005 SANT/Myb 79 129
No external refs found!