Tin_g08818

Description : exoribonuclease *(RRP6L) & original description: none

Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g08818
Cluster	HCCA: Cluster_154

Target	Alias	Description	ECC score	Gene Family Method
Dcu_g36294	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16804	No alias	exoribonuclease *(RRP6L) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os10g30100.1	LOC_Os10g30100	exoribonuclease (RRP6L)	0.02	OrthoFinder output from all 47 species
Pir_g35231	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29907	No alias	exoribonuclease *(RRP6L) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g018520.1.1	Solyc10g018520	exoribonuclease (RRP6L)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEA	Interproscan
CC	GO:0000178	exosome (RNase complex)	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002562	3'-5'_exonuclease_dom	267	433
IPR002121	HRDC_dom	485	551
IPR012588	Exosome-assoc_fac_Rrp6_N	51	131

External Links

No external refs found!