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  5. Tin_g08732

Tin_g08732


Description : RNA ediTing factor *(POCO) & original description: none


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g08732
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AT1G15480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g07750 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11741 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g03895 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_20238 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.05 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Msp_g42997 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14181 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11271 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 468 523
IPR002885 Pentatricopeptide_repeat 624 650
IPR002885 Pentatricopeptide_repeat 589 611
IPR002885 Pentatricopeptide_repeat 658 681
No external refs found!