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  5. Tin_g08538

Tin_g08538 (ATRDRP1, RDR1)


Aliases : ATRDRP1, RDR1

Description : not classified & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g08538

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00056260 SDE1, RDR6,... RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.04 OrthoFinder output from all 47 species
AT3G49500 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 0.03 OrthoFinder output from all 47 species
Adi_g074691 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114067 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11966 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19796 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g39160.1 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.04 OrthoFinder output from all 47 species
MA_467439g0010 SMD1, RDR2 RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g17422 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015753_P001 ATRDRP1, RDR1,... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 428 1019
No external refs found!