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  5. Tin_g08252

Tin_g08252


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g08252

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00027p00223150 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00082900 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g075764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0182.g056457 No alias not classified & original description: CDS=29-2320 0.03 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.04 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.05 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436637g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38066 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g15243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 359 423
IPR000504 RRM_dom 456 519
IPR000504 RRM_dom 279 348
No external refs found!