AMTR_s00016p00170610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.130

Description : External stimuli response.temperature.ICE-CBF cold acclimation transcriptional cascade.ICE1/2 transcription factor


Gene families : OG_01_0000184 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000184_tree ,
OG_02_0001343 (LandPlants) Phylogenetic Tree(s): OG_02_0001343_tree ,
OG_03_0001632 (SeedPlants) Phylogenetic Tree(s): OG_03_0001632_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00170610
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT1G12860 SCRM2, ICE2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
GSVIVT01004405001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01008637001 No alias External stimuli response.temperature.ICE-CBF cold... 0.04 Archaeplastida
GSVIVT01013744001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01013745001 No alias Transcription factor bHLH90 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032998001 No alias External stimuli response.temperature.ICE-CBF cold... 0.02 Archaeplastida
Gb_15579 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os02g02820.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os03g04310.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os06g50900.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_12807g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_448849g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.07 Archaeplastida
Pp3c1_20960V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c2_16410V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Pp3c8_18070V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Solyc02g091690.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc05g005300.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc05g014590.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e010525_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e021526_P001 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.06 Archaeplastida
Zm00001e025243_P003 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e040732_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
AT1G12860 SCRM2, ICE2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 LandPlants
GSVIVT01008637001 No alias External stimuli response.temperature.ICE-CBF cold... 0.03 LandPlants
MA_10435231g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 LandPlants
MA_12807g0010 No alias no hits & (original description: none) 0.05 LandPlants
MA_448849g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.07 LandPlants
Pp3c1_20960V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Pp3c2_16410V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 LandPlants
Pp3c8_18070V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
Smo91237 No alias External stimuli response.temperature.ICE-CBF cold... 0.02 LandPlants
Zm00001e021526_P001 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.04 LandPlants
AT1G12860 SCRM2, ICE2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 SeedPlants
GSVIVT01008637001 No alias External stimuli response.temperature.ICE-CBF cold... 0.03 SeedPlants
MA_10435231g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 SeedPlants
MA_12807g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_448849g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.05 SeedPlants
Zm00001e021526_P001 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 359 401
No external refs found!