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  5. Tin_g06727

Tin_g06727 (PUB26)


Aliases : PUB26

Description : U-Box-group-III E3 ubiquiTin ligase & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06727

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00130440 CMPG2, ATCMPG2,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.03 OrthoFinder output from all 47 species
Ceric.08G030400.1 PUB26, Ceric.08G030400 U-Box-group-III E3 ubiquitin ligase & original... 0.06 OrthoFinder output from all 47 species
Cre01.g016800 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01011139001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01011140001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01011616001 CMPG1, ATCMPG1 U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01031720001 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10425865g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_5536318g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g01700.1 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g11020.1 PUB25 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Nbi_g01051 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10378 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33878 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12004 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo403954 PUB25 U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc04g077610.4.1 Solyc04g077610 U-box domain-containing protein 30 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e036030_P001 Zm00001e036030 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 18 89
No external refs found!