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  5. Tin_g06703

Tin_g06703


Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination heterodimer & original description: none


Gene families : OG0001881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001881_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06703

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
Gb_05160 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 OrthoFinder output from all 47 species
LOC_Os01g47800.1 LOC_Os01g47800 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os09g33980.1 LOC_Os09g33980 ATPase family AAA domain-containing protein At1g05910... 0.03 OrthoFinder output from all 47 species
Ore_g22943 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Solyc07g062770.2.1 Solyc07g062770 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
Zm00001e034695_P003 Zm00001e034695 ATPase family AAA domain-containing protein At1g05910... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 696 831
No external refs found!